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A.Krishna , A.Narayanan , E.C.Keedwell. Reverse Engineering Gene Networks with Artificial Neural Networks. To be published by Springer Verlag Vienna in conference proceedings of International Conference on Adaptive and Natural ComputiNG Algorithms 21-23 March 2005University of Coimbra Portugal
[11/28/2004 11:43:00 PM by Mr Krishna Abhay]
A.Krishna,A.Narayanan,E.C.Keedwell. Neural Networks and Temporal Gene Expression Data. Submitted to EVOBIO 2005 3RD EUROPEAN WORKSHOP ON EVOLUTIONARY COMPUTATION AND BIOINFORMATICS Lausanne, Switzerland, 30 March-1 April 2005
[11/28/2004 11:42:00 PM by Mr Krishna Abhay]
Dissecting the Biological Motherboard
[8/10/2004 11:20:00 PM by Mr Krishna Abhay]
Stand in awe of the Biological Motherboard
[8/10/2004 8:20:00 PM by Mr Krishna Abhay]
 Watch out young bioinformatics forum-2004 for my current research project
http://www.ybf.org/cgi-bin/abstract.cgi?Krsna
[8/2/2004 5:37:00 AM by Mr Krishna Abhay]
HUNT MRSA WITH BIOINFORMATICS BULLETS.
[7/19/2004 5:34:00 PM by Mr Krishna Abhay]
Hunting MRSA superbug
Research Area(s):
Research Level: Unspecified   Project Status: Started

Methicillin resistant Staphylococcus aureus or famouly known as MRSA superbug is the chief reason of hospital infections and death around the world.
UK scientists say the methicillin-resistant Staphylococcus aureus bacteria is becoming increasingly resistant to the antibiotic vancomycin.

Around 5,000 Britons die each year from infections acquired in hospital.

But the researchers, whose study is published in Emerging Infectious Diseases, say more lives will be lost if vancomycin can no longer be used.
It had been thought that vancomycin-resistance was only a problem in one strain of MRSA - seen in the US and Japan.

But scientists from the University of Bath, University of Bristol and Southmead Hospital say all five major types of MRSA - including those seen in the UK - show signs of resistance to vancomycin.
Let's track down this deadly superbug.
To start see
http://www.hpa.org.uk/srmd/bioinformatics/harmony/harmonydb.htm
http://www.hpa.org.uk/srmd/bioinformatics/dbases.htm
http://bioinformatics.phls.org.uk/harmony/harmonydb.htm
http://www.sanger.ac.uk/
http://www.asm.org/Media/index.asp?bid=27480
Actively recruiting for interested members.
This is latest at MRSA front from recent issue of New Scientist:
A UK company claims to have discovered a compound that renders the MRSA superbug vulnerable to the antibiotic it normally resists.

MRSA – methicillin-resistant Staphylococcus aureus – is defined by its ability to resist the antibiotic methicillin. Like penicillin, methicillin works by blocking bacterial enzymes called PBPs, which normally strengthen cell walls by forming cross links.

The first MRSA strains appeared in 1961, just two years after methicillin was launched. These bacteria got their resistance by picking up the gene for another PBP enzyme, PBP2a, to which methicillin cannot bind.

MRSA strains now cause up to 60% of all “staph” infections in some hospitals. Some MRSA strains are also becoming resistant to other antibiotics – including vancomycin, the antibiotic doctors resort to when nothing else works.

But Michael Levey’s team at Pharmaceutica in Worcestershire, UK, may have discovered a way to restore methicillin’s killing power. Following on from work done in the 1990s, his team found that certain compounds containing the amino acid glycine greatly increased 20 different MRSA strains’ susceptibility to methicillin. The dose needed to kill them dropped from 256 milligrams per litre to just 4 mg/l.

The problem was that the concentrations of these glycine compounds had to be very high. “You cannot drown yourself in glycine to treat infection,” points out Brigitte Berger-Bachi at the University of Zurich, Switzerland.
Then Levey got lucky. He learned of another glycine compound that has already been approved for human use in diagnostic tests. Lab tests show that the compound, which Levey calls BTA19976a, makes MRSA susceptible to methicillin at concentrations regarded as safe.

How it works remains mysterious, but it is thought that the glycine alters the composition of the cell wall’s building blocks, preventing PBP2a reinforcing it. Pharmaceutica has now begun testing the compound in mice infected with MRSA.

If it proves effective, BTA19976a could be given to patients along with methicillin to treat MRSA infections, reducing the need for other antibiotics such as vancomycin. Other teams are taking similar approaches, such as trying to design new antibiotics that block the PBP2a enzyme.

But the long-term strategy should be to prevent MRSA infections, points out Dan Jernigan of the US Centers for Disease Control. “No matter what we do, bacteria will find a way around it. But there are some things that always work. Resistant bacteria are not resistant to hand washing.”
But is it true,what to wash hands with?






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Mr Krishna AbhayUNIVERSITY OF EXETER U.KMentor/AdvisorSend email to this member
Mr jaiswal pushpendraJAYPEE INSTITUTE OF INFORMATION TECHNOLOGY, NOIDA , INDIAMemberSend email to this member

To send emails to all the team members, please click here.
   DateDescription 
19 July 04Project initiated by Mr Krishna Abhay 
23 July 04Expected completion date changed to: 1 February 2005 
2 August 04Recruitment advertisement updated. 
4 September 04New member Mr jaiswal pushpendra joined project team 
17 October 04Recruitment advertisement updated. 
17 October 04Project description updated. 
28 November 04Project status updated 
29 November 04New file uploaded: Important URL and project plan ... 
29 November 04New file uploaded: Important URL and project plan ... 
20 February 05New file uploaded: deadlines changed ... 

System   Membership   Research
Project plan and deadlines with important URL.doc [25 KB]
Category: Biology - Others
Title: deadlines changed
  

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