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I Wish ToRecommended Resources
Search a database for a nucleotide or protein of interest using keywordsEntrez | SwissProt
Search a database with an unknown nucleotide or protein sequence to find out its potential function or to pick out similar sequences to itBLAST
Search multiple databases for a nucleotide or protein of interest using keywordsSequence Retrieval System
Search the databases with multiple nucleotide or protein sequences to find out their potential function or to pick out similar sequencesHighthroughput BLAST
Align 2 sequences to find out the best local alignment between themMatcher | Water
Align 2 sequences to find out the best global alignment between themStretcher | ORF Finder
Align several sequences from multiple organisms to find conserved regions in these sequences

Determine the evolutionary relationship based on the similarity of sequences from multiple organisms aligned together		ClustalW
Download and look at the 3D structure of a moleculeCn3D
Find the open reading frame for my nucleotide sequence and translate that into a protein sequenceGetORF | ORF Finder
Find the restriction enzyme sites for my sequenceRestrict | Restriction Map
Design primersePrimer3 | PCR Reaction
Translate a nucleotide sequence to an amino acid sequenceTranseq | Translate
Back Translate an amino acid sequenceBacktranseq
Calculates the molecular weight for my protein sequenceProtein Molecular Weight
Calculates the isoelectric point for my protein sequenceProtein Isoelectric Point
Search for the protein family my protein possibly belong toInterPro
Search the Genome browser to find more information about my gene or its sequenceUCSC Genome Browser | BLAT

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